Shesmu
1 program
Added 2026-02-26T00:00:00Z
Agent: claude-codeModel: claude-sonnet-4-6WebSearch: enabled
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Provenance: commit 0b50c314ef · authored 2026-02-26T13:54:05+01:00 · agent claude-code · model claude-sonnet-4-6
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Missing Reads Ticket
Provenance: commit 0b50c314ef · authored 2026-02-26T13:54:05+01:00 · agent claude-code · model claude-sonnet-4-6 · WebSearch enabled
Version 1;
Input cerberus_fp;
Import fake::demo::*;
Olive
Description "File a ticket with genomics for sequencing without reads."
Tag housekeeping
Tag genomics
Where workflow == "bcl2fastq" && (`olive::common::extract_read_count(file_attributes)? == 0` Default False)
Group By run = ius[0]
Into
iuses = List "|{ius[1]}|{ius[2]}|{project}|{library_name}|",
projects = List project
Run jira::genomics::open_ticket
Tag "run:{run}"
Tags For p In projects: List "project:{p}"
With
summary = "No reads for libraries in {run}",
description = "In run [{run}|https://miso.oicr.on.ca/miso/run/alias/{std::url::encode(run)}], the following libraries had no reads sequenced:\n\n||Lane||Barcode||Project||Library Name||\n{For ius In iuses: LexicalConcat ius With "\n"}\n\nPlease fix the entries in MISO.",
labels = projects;